PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597572.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 296aa    MW: 33278.6 Da    PI: 10.0807
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.91.3e-2364144286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+l+Li+ ++e++ +++rg lk ++Wee+s  + ++ g+ers++qC++k+e+l+kr+++++++++       s +p+++q+e
  XP_013597572.1  64 WTEDETLLLIDSYKEKWYDVGRGPLKSNQWEEISVSVsARSGVERSATQCRHKMEKLRKRFRAERQSMGPI-----SIWPFYSQME 144
                     ***********************************998899****************************84.....68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2064146No hitNo description
PROSITE profilePS500906.6964121IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATPSPTPSP PPPPPSDSNP NPPHQNPPPS SFTAIQTPPS PQTTVVALGA STSAFARKTQ  60
PVLWTEDETL LLIDSYKEKW YDVGRGPLKS NQWEEISVSV SARSGVERSA TQCRHKMEKL  120
RKRFRAERQS MGPISIWPFY SQMEELDSNP APISARPLTR LPPPSNHYAE DEDDDDDEDE  180
SLNKSRSINH IVRRPGTVNR FAGVGGGLLQ WGQKERSKRK KKDEGGGGER RMKGARAVAY  240
EIRAFAEKTM VMENKKMEFA KETVKLRKEM EMKRLKLIQS SQAQLLQFLN TSFASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597572.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A0D3D4X40.0A0A0D3D4X4_BRAOL; Uncharacterized protein
STRINGBra015090.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-121Trihelix family protein